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Your Ecommerce Accounting Setup Ninjas

Get your business’s financial foundation in order, save time, and eliminate unnecessary risks with Bean Ninjas’ ecommerce accounting system and setup services.  

What you get with any of Bean Ninjas’

eCommerce accounting setup services

Discovery call and assessment of current accounting systems
Customized implementation plan
2 1:1 training sessions for Xero, Quickbooks, and/or A2X
Your Chart of Accounts and bookkeeping is set up correctly.
Work with an eCommerce accounting expert.
Ongoing support
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Say goodbye to your eCommerce accounting headaches

We love setting up Xero because we love equipping entrepreneurs with the tools they need to thrive.

After a discovery call with you, one of our expert Bean Ninjas will conduct a business analysis and design a customised Xero implementation plan.

Once your Xero file is set up, we don’t just hand it over and say “good luck.” You get two one-on-one Xero training sessions so you have the confidence to use Xero like a pro.

By the end of your Xero Setup, you and your new Xero bookkeeping system are ready to go!

​Should you need it, we’re also here to provide ongoing support, advice and training.

Ecommerce Accounting Setup Checklist

We handle everything for you

  • Create your customized chart of accounts in either Xero or Quickbooks
  • Sync with A2X
  • Link your business bank accounts and payment feeds including Amazon, Stripe, Shopify, etc.
  • Show how you create automated reconciliation rules for maximum efficiency and time savings.
  • Set up tax and financial settings, including applicable sales tax rates
  • Add and manage users to give your team or accountant access.
  • Add business details and branding, including your contact details and logo
  • Set up payroll in Gusto, if required (extra)

The Bean Ninjas Process

1. Complete our getting started form. 

It takes a few minutes to complete. We gather some basic contact information, and a member of our team will reach out. 

Get Started →

2. Hop on a Discovery Call. 

We start with a 30-minute discovery call to get to know you and your business, analyze your needs, understand your current bookkeeping system and your financial goals for the future.

After our call, we email you a list of information we need to get started.

From there, we do all the work.

3. Ecommerce accounting setup and implementation

Our team are experts at setting up Xero, Quickbooks, and A2X for 6, 7, and 8-figure eCommerce businesses to help you meet your business goals. 

The aim is to minimize your time and stress, and give you clarity and control over your business finances.

We’ll also clean up your account, including reconcile prior period transactions. Timelines vary based on level of effort and complexity.

4. Ongoing training and support

Once your account is set up, you’ll receive 2 one-on-one training sessions with a certified eCommerce accountant, so you have the confidence to use Xero, Quickbooks, or A2X like a pro.

We’ll show you how to make the most of the tools and features that are relevant to your business. 

 We also offer ongoing support, advice and training. 

Take control of your business’s finances

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Want ongoing eCommerce accounting support?

After your eCommerce accounting setup, we offer optional bookkeeping services. 

If you’d like our assistance, we can help you choose the right bookkeeping plan to suit your needs and goals.

👉 Discover our bookkeeping services

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Meet the Ninjas

We’re a friendly team of (slightly geeky) eCommerce accounting and bookkeeping experts on a mission to make your business finances a breeze.

Our senior team is made up of Chartered Accountants, CPAs and management accountants with years of professional experience. It means you benefit from knowledge that exceeds that of a standard bookkeeper.

Additionally, our unique perspective into the books of 100s of eCommerce brands brings unmatched industry insights and benchmarking guidance.


From little beans, big beans grow

With Bean Ninjas, you get a bookkeeping solution that can scale with your business.
There’s no need to swap platforms or change systems as you grow.

We specialize in accounting and bookkeeping services for eCommerce businesses.

We’re a global accounting firm with HQs in the United States, Australia, and the United Kingdom.

We specialize in working with eCommerce businesses using Shopify, WooCommerce, Amazon FBA, BigCommerce, and selling omni-channel.

What Our Clients Say

Crockd customer story beanninjas

“Although I could do a lot of this myself, I think it makes a big difference when you can step away outside the business and look from the top down, rather than from being inside the business all the time and trying to understand what’s going on with the finances. 

The providers and people we work with must align with our values, and I think Bean Ninjas does that really well.”

👉 Read Andrew’s story 


“A lot of bookkeeping is much more of a traditional thing, so being able to get someone who understood how to work with Xero, versus, you know QuickBooks and understand how to deal with inventory and how we kind of deal with eCommerce. There’s different snapshots of our numbers that we have to know, and Bean Ninjas really specialized in that.” 

👉 Read Dafina’s story 


“Having our financials once a week instead of once a quarter offered more visibility and clarity. Im not out of touch from being so far from the coalface.” 

👉 Read Jase’s story